Have you seen the Account balances page on our wiki ?
http://wiki.mthbuilt.com/Account_balances_explained If you haven't please take a look.
We would like to see a screenshot with the problem, it very well could be a bug because we redid some of the sorting flows in build 40
You can take a screen shot right from My Money, build 40 includes a screen capture utility under Help/Screen Capture
Please PM it to us or send to info at mthbuilt.com
Thanks